>    The problem sounds indeed like a simple search&replace task, which
> tools like sed or perl are designed for.

So I've got to manually compare the files and figure out what changed 
(admittedly, a fairly easy if tedious task), and then construct an 
elaborate regex to tell Perl how to do that?

Looks like it's time to write some custom automation. Or stop using the 
tool that's causing me the problem in the first place...

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