// POV-Ray ray tracer scene file, generated by Swiss-PdbViewer
// File:C:\Documents and Settings\Owner\Desktop\Helix.inc
// Swiss-PdbViewer can be retrieved by anonymous ftp from:
// http://www.expasy.org/spdbv/
//
// POV-Ray can be retrieved at: http://www.povray.org
// N.Guex, 1995-2002
//

// LEU279 
#declare A0_shape=union{
cylinder{<0.14,8.08,-1.09>,<-0.26,8.08,-0.56>,r_Bnd open }
sphere  {<1.28,10.18,-0.13>,rN }
cylinder{<1.28,10.18,-0.13>,<1.08,9.80,-0.74>,r_Bnd open }
cylinder{<1.08,9.80,-0.74>,<0.87,9.42,-1.36>,r_Bnd open }
sphere  {<0.14,8.08,-1.09>,rC }
sphere  {<0.87,9.42,-1.36>,rCA }
cylinder{<0.87,9.42,-1.36>,<0.14,8.08,-1.09>,r_Bnd open }
cylinder{<0.14,8.08,-1.09>,<0.25,7.59,-1.44>,r_Bnd open }
sphere  {<0.35,7.09,-1.79>,rO }
cylinder{<0.25,7.59,-1.44>,<0.35,7.09,-1.79>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.40 blue 1.00} finish{ ATM_FINISH }}
}

// PHE280 
#declare A1_shape=union{
cylinder{<-0.26,8.08,-0.56>,<-0.65,8.08,-0.02>,r_Bnd open }
cylinder{<-0.67,5.58,0.50>,<-0.01,5.63,0.56>,r_Bnd open }
sphere  {<-0.65,8.08,-0.02>,rN }
cylinder{<-0.65,8.08,-0.02>,<-1.05,7.50,0.23>,r_Bnd open }
cylinder{<-1.05,7.50,0.23>,<-1.44,6.92,0.47>,r_Bnd open }
sphere  {<-0.67,5.58,0.50>,rC }
sphere  {<-1.44,6.92,0.47>,rCA }
cylinder{<-1.44,6.92,0.47>,<-0.67,5.58,0.50>,r_Bnd open }
cylinder{<-0.67,5.58,0.50>,<-0.98,5.06,0.48>,r_Bnd open }
sphere  {<-1.29,4.53,0.47>,rO }
cylinder{<-0.98,5.06,0.48>,<-1.29,4.53,0.47>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.40 blue 1.00} finish{ ATM_FINISH }}
}

// THR281 
#declare A2_shape=union{
cylinder{<-0.01,5.63,0.56>,<0.65,5.68,0.61>,r_Bnd open }
cylinder{<1.28,3.49,-0.55>,<0.87,3.66,-1.05>,r_Bnd open }
sphere  {<0.65,5.68,0.61>,rN }
cylinder{<0.65,5.68,0.61>,<1.16,5.15,0.52>,r_Bnd open }
cylinder{<1.16,5.15,0.52>,<1.67,4.61,0.43>,r_Bnd open }
sphere  {<1.28,3.49,-0.55>,rC }
sphere  {<1.67,4.61,0.43>,rCA }
cylinder{<1.67,4.61,0.43>,<1.28,3.49,-0.55>,r_Bnd open }
cylinder{<1.28,3.49,-0.55>,<1.48,2.92,-0.47>,r_Bnd open }
sphere  {<1.69,2.34,-0.39>,rO }
cylinder{<1.48,2.92,-0.47>,<1.69,2.34,-0.39>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.20 blue 1.00} finish{ ATM_FINISH }}
}

// MET282 
#declare A3_shape=union{
cylinder{<0.87,3.66,-1.05>,<0.46,3.83,-1.55>,r_Bnd open }
cylinder{<-0.95,1.74,-1.83>,<-1.32,1.91,-1.30>,r_Bnd open }
sphere  {<0.46,3.83,-1.55>,rN }
cylinder{<0.46,3.83,-1.55>,<0.15,3.35,-2.02>,r_Bnd open }
cylinder{<0.15,3.35,-2.02>,<-0.15,2.88,-2.50>,r_Bnd open }
sphere  {<-0.95,1.74,-1.83>,rC }
sphere  {<-0.15,2.88,-2.50>,rCA }
cylinder{<-0.15,2.88,-2.50>,<-0.95,1.74,-1.83>,r_Bnd open }
cylinder{<-0.95,1.74,-1.83>,<-0.86,1.16,-2.01>,r_Bnd open }
sphere  {<-0.77,0.58,-2.19>,rO }
cylinder{<-0.86,1.16,-2.01>,<-0.77,0.58,-2.19>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.00 blue 1.00} finish{ ATM_FINISH }}
}

// VAL283 
#declare A4_shape=union{
cylinder{<-1.32,1.91,-1.30>,<-1.69,2.07,-0.76>,r_Bnd open }
cylinder{<-1.46,0.02,0.62>,<-0.89,0.25,0.87>,r_Bnd open }
sphere  {<-1.69,2.07,-0.76>,rN }
cylinder{<-1.69,2.07,-0.76>,<-2.05,1.57,-0.36>,r_Bnd open }
cylinder{<-2.05,1.57,-0.36>,<-2.42,1.07,0.04>,r_Bnd open }
sphere  {<-1.46,0.02,0.62>,rC }
sphere  {<-2.42,1.07,0.04>,rCA }
cylinder{<-2.42,1.07,0.04>,<-1.46,0.02,0.62>,r_Bnd open }
cylinder{<-1.46,0.02,0.62>,<-1.56,-0.57,0.48>,r_Bnd open }
sphere  {<-1.66,-1.16,0.34>,rO }
cylinder{<-1.56,-0.57,0.48>,<-1.66,-1.16,0.34>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.20 blue 1.00} finish{ ATM_FINISH }}
}

// PHE284 
#declare A5_shape=union{
cylinder{<-0.89,0.25,0.87>,<-0.32,0.49,1.13>,r_Bnd open }
cylinder{<1.22,-1.41,0.60>,<1.25,-1.22,-0.04>,r_Bnd open }
sphere  {<-0.32,0.49,1.13>,rN }
cylinder{<-0.32,0.49,1.13>,<0.22,0.06,1.38>,r_Bnd open }
cylinder{<0.22,0.06,1.38>,<0.76,-0.37,1.64>,r_Bnd open }
sphere  {<1.22,-1.41,0.60>,rC }
sphere  {<0.76,-0.37,1.64>,rCA }
cylinder{<0.76,-0.37,1.64>,<1.22,-1.41,0.60>,r_Bnd open }
cylinder{<1.22,-1.41,0.60>,<1.29,-1.99,0.76>,r_Bnd open }
sphere  {<1.35,-2.58,0.93>,rO }
cylinder{<1.29,-1.99,0.76>,<1.35,-2.58,0.93>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.40 blue 1.00} finish{ ATM_FINISH }}
}

// VAL285 
#declare A6_shape=union{
cylinder{<1.25,-1.22,-0.04>,<1.28,-1.03,-0.67>,r_Bnd open }
cylinder{<0.73,-3.19,-1.84>,<0.10,-3.08,-1.99>,r_Bnd open }
sphere  {<1.28,-1.03,-0.67>,rN }
cylinder{<1.28,-1.03,-0.67>,<1.46,-1.49,-1.23>,r_Bnd open }
cylinder{<1.46,-1.49,-1.23>,<1.64,-1.94,-1.78>,r_Bnd open }
sphere  {<0.73,-3.19,-1.84>,rC }
sphere  {<1.64,-1.94,-1.78>,rCA }
cylinder{<1.64,-1.94,-1.78>,<0.73,-3.19,-1.84>,r_Bnd open }
cylinder{<0.73,-3.19,-1.84>,<0.96,-3.75,-1.77>,r_Bnd open }
sphere  {<1.20,-4.32,-1.71>,rO }
cylinder{<0.96,-3.75,-1.77>,<1.20,-4.32,-1.71>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 0.60 blue 1.00} finish{ ATM_FINISH }}
}

// ILE286 
#declare A7_shape=union{
cylinder{<0.10,-3.08,-1.99>,<-0.54,-2.97,-2.14>,r_Bnd open }
cylinder{<-1.74,-4.79,-0.94>,<-2.00,-4.44,-0.45>,r_Bnd open }
sphere  {<-0.54,-2.97,-2.14>,rN }
cylinder{<-0.54,-2.97,-2.14>,<-1.04,-3.50,-2.21>,r_Bnd open }
cylinder{<-1.04,-3.50,-2.21>,<-1.54,-4.04,-2.27>,r_Bnd open }
sphere  {<-1.74,-4.79,-0.94>,rC }
sphere  {<-1.54,-4.04,-2.27>,rCA }
cylinder{<-1.54,-4.04,-2.27>,<-1.74,-4.79,-0.94>,r_Bnd open }
cylinder{<-1.74,-4.79,-0.94>,<-1.63,-5.39,-0.92>,r_Bnd open }
sphere  {<-1.53,-6.00,-0.89>,rO }
cylinder{<-1.63,-5.39,-0.92>,<-1.53,-6.00,-0.89>,r_Bnd open }
texture{ pigment{ colour red 0.00 green 1.00 blue 1.00} finish{ ATM_FINISH }}
}

// SER287 
#declare A8_shape=union{
cylinder{<-2.00,-4.44,-0.45>,<-2.26,-4.08,0.05>,r_Bnd open }
cylinder{<-1.33,-5.25,2.07>,<-0.86,-4.82,2.26>,r_Bnd open }
sphere  {<-2.26,-4.08,0.05>,rN }
cylinder{<-2.26,-4.08,0.05>,<-2.41,-4.37,0.71>,r_Bnd open }
cylinder{<-2.41,-4.37,0.71>,<-2.57,-4.66,1.37>,r_Bnd open }
sphere  {<-1.33,-5.25,2.07>,rC }
sphere  {<-2.57,-4.66,1.37>,rCA }
cylinder{<-2.57,-4.66,1.37>,<-1.33,-5.25,2.07>,r_Bnd open }
cylinder{<-1.33,-5.25,2.07>,<-1.27,-5.86,2.14>,r_Bnd open }
sphere  {<-1.22,-6.46,2.20>,rO }
cylinder{<-1.27,-5.86,2.14>,<-1.22,-6.46,2.20>,r_Bnd open }
texture{ pigment{ colour red 1.00 green 0.00 blue 0.00} finish{ ATM_FINISH }}
}

// SER288 
#declare A9_shape=union{
cylinder{<-0.86,-4.82,2.26>,<-0.40,-4.39,2.45>,r_Bnd open }
cylinder{<1.78,-5.64,2.44>,<2.04,-5.40,1.87>,r_Bnd open }
sphere  {<-0.40,-4.39,2.45>,rN }
cylinder{<-0.40,-4.39,2.45>,<0.20,-4.57,2.84>,r_Bnd open }
cylinder{<0.20,-4.57,2.84>,<0.80,-4.76,3.23>,r_Bnd open }
sphere  {<1.78,-5.64,2.44>,rC }
sphere  {<0.80,-4.76,3.23>,rCA }
cylinder{<0.80,-4.76,3.23>,<1.78,-5.64,2.44>,r_Bnd open }
cylinder{<1.78,-5.64,2.44>,<1.92,-6.20,2.66>,r_Bnd open }
sphere  {<2.05,-6.75,2.88>,rO }
cylinder{<1.92,-6.20,2.66>,<2.05,-6.75,2.88>,r_Bnd open }
texture{ pigment{ colour red 1.00 green 0.00 blue 0.00} finish{ ATM_FINISH }}
}

// ILE289 
#declare A10_shape=union{
cylinder{<2.04,-5.40,1.87>,<2.30,-5.15,1.31>,r_Bnd open }
cylinder{<2.51,-7.20,-0.07>,<2.03,-7.13,-0.51>,r_Bnd open }
sphere  {<2.30,-5.15,1.31>,rN }
cylinder{<2.30,-5.15,1.31>,<2.76,-5.54,0.87>,r_Bnd open }
cylinder{<2.76,-5.54,0.87>,<3.21,-5.92,0.43>,r_Bnd open }
sphere  {<2.51,-7.20,-0.07>,rC }
sphere  {<3.21,-5.92,0.43>,rCA }
cylinder{<3.21,-5.92,0.43>,<2.51,-7.20,-0.07>,r_Bnd open }
cylinder{<2.51,-7.20,-0.07>,<2.72,-7.76,0.11>,r_Bnd open }
sphere  {<2.93,-8.31,0.29>,rO }
cylinder{<2.72,-7.76,0.11>,<2.93,-8.31,0.29>,r_Bnd open }
texture{ pigment{ colour red 1.00 green 0.60 blue 0.00} finish{ ATM_FINISH }}
}

// ILE290 
#declare A11_shape=union{
cylinder{<2.03,-7.13,-0.51>,<1.54,-7.05,-0.96>,r_Bnd open }
sphere  {<1.54,-7.05,-0.96>,rN }
cylinder{<1.54,-7.05,-0.96>,<1.16,-7.63,-1.25>,r_Bnd open }
cylinder{<1.16,-7.63,-1.25>,<0.78,-8.20,-1.53>,r_Bnd open }
sphere  {<0.03,-8.98,-0.43>,rC }
sphere  {<0.78,-8.20,-1.53>,rCA }
cylinder{<0.78,-8.20,-1.53>,<0.03,-8.98,-0.43>,r_Bnd open }
cylinder{<0.03,-8.98,-0.43>,<0.16,-9.59,-0.39>,r_Bnd open }
sphere  {<0.28,-10.20,-0.35>,rO }
cylinder{<0.16,-9.59,-0.39>,<0.28,-10.20,-0.35>,r_Bnd open }
texture{ pigment{ colour red 1.00 green 0.60 blue 0.00} finish{ ATM_FINISH }}
}

// ------- Accessible Dot Surf. --------

//---- H-Bonds ----

// ILE290 
#declare A12_shape=union{
cylinder{<0.46,3.83,-1.55>,<0.46,4.08,-1.57>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.45,4.33,-1.59>,<0.44,4.58,-1.61>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.43,4.83,-1.63>,<0.42,5.08,-1.65>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.41,5.34,-1.66>,<0.41,5.59,-1.68>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.40,5.84,-1.70>,<0.39,6.09,-1.72>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.38,6.34,-1.74>,<0.37,6.59,-1.76>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.36,6.84,-1.78>,<0.35,7.09,-1.79>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.69,2.07,-0.76>,<-1.66,2.26,-0.67>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.63,2.45,-0.57>,<-1.60,2.64,-0.48>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.56,2.82,-0.39>,<-1.53,3.01,-0.29>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.50,3.20,-0.20>,<-1.47,3.39,-0.10>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.44,3.58,-0.01>,<-1.41,3.77,0.09>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.38,3.96,0.18>,<-1.35,4.15,0.28>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.32,4.34,0.37>,<-1.29,4.53,0.47>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.32,0.49,1.13>,<-0.17,0.63,1.01>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.01,0.78,0.90>,<0.14,0.92,0.78>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.30,1.06,0.66>,<0.45,1.20,0.55>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.61,1.35,0.43>,<0.76,1.49,0.31>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.91,1.63,0.20>,<1.07,1.77,0.08>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.22,1.92,-0.04>,<1.38,2.06,-0.15>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.53,2.20,-0.27>,<1.69,2.34,-0.39>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.28,-1.03,-0.67>,<1.12,-0.91,-0.79>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.96,-0.78,-0.91>,<0.81,-0.66,-1.02>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.65,-0.54,-1.14>,<0.49,-0.41,-1.26>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.33,-0.29,-1.37>,<0.17,-0.16,-1.49>,r_HBnd open texture{HBnd_tex}}
cylinder{<0.02,-0.04,-1.61>,<-0.14,0.08,-1.72>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.30,0.21,-1.84>,<-0.46,0.33,-1.96>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.62,0.46,-2.07>,<-0.77,0.58,-2.19>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.54,-2.97,-2.14>,<-0.63,-2.83,-1.95>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.71,-2.69,-1.76>,<-0.80,-2.55,-1.57>,r_HBnd open texture{HBnd_tex}}
cylinder{<-0.89,-2.41,-1.38>,<-0.97,-2.27,-1.19>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.06,-2.13,-1.00>,<-1.14,-1.99,-0.81>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.23,-1.86,-0.62>,<-1.32,-1.72,-0.43>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.40,-1.58,-0.23>,<-1.49,-1.44,-0.04>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.58,-1.30,0.15>,<-1.66,-1.16,0.34>,r_HBnd open texture{HBnd_tex}}
cylinder{<-2.26,-4.08,0.05>,<-2.21,-3.86,0.07>,r_HBnd open texture{HBnd_tex}}
cylinder{<-2.17,-3.63,0.10>,<-2.12,-3.41,0.12>,r_HBnd open texture{HBnd_tex}}
cylinder{<-2.07,-3.19,0.14>,<-2.03,-2.96,0.16>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.98,-2.74,0.18>,<-1.94,-2.51,0.21>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.89,-2.29,0.23>,<-1.85,-2.06,0.25>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.80,-1.84,0.27>,<-1.75,-1.61,0.29>,r_HBnd open texture{HBnd_tex}}
cylinder{<-1.71,-1.39,0.32>,<-1.66,-1.16,0.34>,r_HBnd open texture{HBnd_tex}}
cylinder{<2.30,-5.15,1.31>,<2.23,-4.96,1.28>,r_HBnd open texture{HBnd_tex}}
cylinder{<2.15,-4.76,1.25>,<2.08,-4.56,1.22>,r_HBnd open texture{HBnd_tex}}
cylinder{<2.01,-4.36,1.19>,<1.93,-4.16,1.16>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.86,-3.97,1.13>,<1.79,-3.77,1.10>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.71,-3.57,1.07>,<1.64,-3.37,1.05>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.57,-3.18,1.02>,<1.50,-2.98,0.99>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.42,-2.78,0.96>,<1.35,-2.58,0.93>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.54,-7.05,-0.96>,<1.51,-6.84,-1.02>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.48,-6.63,-1.08>,<1.46,-6.42,-1.13>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.43,-6.21,-1.19>,<1.41,-6.00,-1.25>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.38,-5.79,-1.31>,<1.35,-5.58,-1.36>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.33,-5.37,-1.42>,<1.30,-5.16,-1.48>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.27,-4.95,-1.53>,<1.25,-4.74,-1.59>,r_HBnd open texture{HBnd_tex}}
cylinder{<1.22,-4.53,-1.65>,<1.20,-4.32,-1.71>,r_HBnd open texture{HBnd_tex}}
}
//END