// POV-Ray ray tracer scene file, generated by Swiss-PdbViewer  3.70
// 100 100 n 1
// File:C:\Documents and Settings\Owner\Desktop\Helix.pov
// Swiss-PdbViewer can be retrieved by anonymous ftp at:
// http://www.expasy.org/spdbv/
//
// POV-Ray can be retrieved at: http://www.povray.org
// N.Guex, 1995-2002
//
#version 3.5;   // this scene uses POVRAY 3.5 syntax

#include "colors.inc"
#include "textures.inc"

// ------ COLORS ---------

#declare ATM_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3> }
#declare RIBBON_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3>}
#declare SURF_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3>}
#declare EDM1_tex = texture {pigment {colour red 0.475 green 0.000 blue 0.000 } finish {specular 1 roughness 0.001}}
#declare EDM2_tex = texture {pigment {colour red 0.475 green 0.475 blue 0.475 } finish {specular 1 roughness 0.001}}
#declare N_tex = texture { pigment { colour red 0.224 green 0.318 blue 1.000 } finish{ ATM_FINISH }}
#declare C_tex = texture { pigment { colour red 1.000 green 1.000 blue 1.000 } finish{ ATM_FINISH }}
#declare O_tex = texture { pigment { colour red 1.000 green 0.000 blue 0.000 } finish{ ATM_FINISH }}
#declare P_tex = texture { pigment { colour red 1.000 green 0.659 blue 0.075 } finish{ ATM_FINISH }}
#declare H_tex = texture { pigment { colour red 0.275 green 0.800 blue 1.000 } finish{ ATM_FINISH }}
#declare S_tex = texture { pigment { colour red 1.000 green 0.922 blue 0.000 } finish{ ATM_FINISH }}
#declare X_tex = texture { pigment { colour red 0.624 green 0.624 blue 0.624 } finish{ ATM_FINISH }}
#declare SSBnd_tex = texture { pigment { colour red 1.000 green 0.922 blue 0.000 } finish{ ATM_FINISH }}
#declare HBnd_tex = texture { pigment { colour red 0.502 green 0.000 blue 0.502 filter 0.0} finish{ ATM_FINISH }}
#declare WkHBnd_tex = texture { pigment { colour red 0.561 green 0.675 blue 0.561 filter 0.0} finish{ ATM_FINISH }}
#declare Clash_tex = texture { pigment { colour red 1.000 green 0.424 blue 1.000 filter 0.0} finish{ ATM_FINISH }}

// ------ Bonds radii ---------

#declare rRIBN = 0.06;  // flat Ribbon radius
#declare rEDM  = 0.025; // EDM cylinder radius
#declare rSURF = 0.025; // SURFACE cylinder radius (when not filled surf.)
#declare r_Atm = 0.200;   // atom radius
#declare r_Bnd = 0.200;   // bond radius
#declare r_HBnd = 0.075;   // H-bond radius
#declare CA_relativeSize = 1.000;   // enlargement factor for CA

 #declare rDOT_SURF = 0.05; // radius for accessible surf. dots.

 #declare VDW_factor = 0.200;   // changing this value will alter the radius of "joining" atoms

// ---- Radius for  atoms ----
// ---- Radius for "spacefilled" atoms end with '_' ----
 #declare rH = 1.10 * VDW_factor ;
 #declare rH_ = 1.10 ;
 #declare rHe = 1.10 * VDW_factor ;
 #declare rHe_ = 1.10 ;
 #declare rLi = 1.10 * VDW_factor ;
 #declare rLi_ = 1.10 ;
 #declare rBe = 1.10 * VDW_factor ;
 #declare rBe_ = 1.10 ;
 #declare rB = 1.10 * VDW_factor ;
 #declare rB_ = 1.10 ;
 #declare rC = 1.70 * VDW_factor ;
 #declare rC_ = 1.70 ;
 #declare rN = 1.50 * VDW_factor ;
 #declare rN_ = 1.50 ;
 #declare rO = 1.40 * VDW_factor ;
 #declare rO_ = 1.40 ;
 #declare rF = 1.10 * VDW_factor ;
 #declare rF_ = 1.10 ;
 #declare rNe = 1.10 * VDW_factor ;
 #declare rNe_ = 1.10 ;
 #declare rNa = 1.10 * VDW_factor ;
 #declare rNa_ = 1.10 ;
 #declare rMg = 1.10 * VDW_factor ;
 #declare rMg_ = 1.10 ;
 #declare rAl = 1.10 * VDW_factor ;
 #declare rAl_ = 1.10 ;
 #declare rSi = 1.10 * VDW_factor ;
 #declare rSi_ = 1.10 ;
 #declare rP = 1.90 * VDW_factor ;
 #declare rP_ = 1.90 ;
 #declare rS = 1.85 * VDW_factor ;
 #declare rS_ = 1.85 ;
 #declare rCl = 1.10 * VDW_factor ;
 #declare rCl_ = 1.10 ;
 #declare rAr = 1.10 * VDW_factor ;
 #declare rAr_ = 1.10 ;
 #declare rK = 1.10 * VDW_factor ;
 #declare rK_ = 1.10 ;
 #declare rCa = 1.10 * VDW_factor ;
 #declare rCa_ = 1.10 ;
 #declare rSc = 1.10 * VDW_factor ;
 #declare rSc_ = 1.10 ;
 #declare rTi = 1.10 * VDW_factor ;
 #declare rTi_ = 1.10 ;
 #declare rV = 1.10 * VDW_factor ;
 #declare rV_ = 1.10 ;
 #declare rCr = 1.10 * VDW_factor ;
 #declare rCr_ = 1.10 ;
 #declare rMn = 1.10 * VDW_factor ;
 #declare rMn_ = 1.10 ;
 #declare rFe = 1.10 * VDW_factor ;
 #declare rFe_ = 1.10 ;
 #declare rCo = 1.10 * VDW_factor ;
 #declare rCo_ = 1.10 ;
 #declare rNi = 1.10 * VDW_factor ;
 #declare rNi_ = 1.10 ;
 #declare rCu = 1.10 * VDW_factor ;
 #declare rCu_ = 1.10 ;
 #declare rZn = 1.10 * VDW_factor ;
 #declare rZn_ = 1.10 ;
 #declare rGa = 1.10 * VDW_factor ;
 #declare rGa_ = 1.10 ;
 #declare rGe = 1.10 * VDW_factor ;
 #declare rGe_ = 1.10 ;
 #declare rAs = 1.10 * VDW_factor ;
 #declare rAs_ = 1.10 ;
 #declare rSe = 1.10 * VDW_factor ;
 #declare rSe_ = 1.10 ;
 #declare rBr = 1.10 * VDW_factor ;
 #declare rBr_ = 1.10 ;
 #declare rKr = 1.10 * VDW_factor ;
 #declare rKr_ = 1.10 ;
 #declare rRb = 1.10 * VDW_factor ;
 #declare rRb_ = 1.10 ;
 #declare rSr = 1.10 * VDW_factor ;
 #declare rSr_ = 1.10 ;
 #declare rY = 1.10 * VDW_factor ;
 #declare rY_ = 1.10 ;
 #declare rZr = 1.10 * VDW_factor ;
 #declare rZr_ = 1.10 ;
 #declare rNb = 1.10 * VDW_factor ;
 #declare rNb_ = 1.10 ;
 #declare rMo = 1.10 * VDW_factor ;
 #declare rMo_ = 1.10 ;
 #declare rTc = 1.10 * VDW_factor ;
 #declare rTc_ = 1.10 ;
 #declare rRu = 1.10 * VDW_factor ;
 #declare rRu_ = 1.10 ;
 #declare rRh = 1.10 * VDW_factor ;
 #declare rRh_ = 1.10 ;
 #declare rPd = 1.10 * VDW_factor ;
 #declare rPd_ = 1.10 ;
 #declare rAg = 1.10 * VDW_factor ;
 #declare rAg_ = 1.10 ;
 #declare rCd = 1.10 * VDW_factor ;
 #declare rCd_ = 1.10 ;
 #declare rIn = 1.10 * VDW_factor ;
 #declare rIn_ = 1.10 ;
 #declare rSn = 1.10 * VDW_factor ;
 #declare rSn_ = 1.10 ;
 #declare rSb = 1.10 * VDW_factor ;
 #declare rSb_ = 1.10 ;
 #declare rTe = 1.10 * VDW_factor ;
 #declare rTe_ = 1.10 ;
 #declare rI = 1.10 * VDW_factor ;
 #declare rI_ = 1.10 ;
 #declare rXe = 1.10 * VDW_factor ;
 #declare rXe_ = 1.10 ;
 #declare rCs = 1.10 * VDW_factor ;
 #declare rCs_ = 1.10 ;
 #declare rBa = 1.10 * VDW_factor ;
 #declare rBa_ = 1.10 ;
 #declare rLa = 1.10 * VDW_factor ;
 #declare rLa_ = 1.10 ;
 #declare rCe = 1.10 * VDW_factor ;
 #declare rCe_ = 1.10 ;
 #declare rPr = 1.10 * VDW_factor ;
 #declare rPr_ = 1.10 ;
 #declare rNd = 1.10 * VDW_factor ;
 #declare rNd_ = 1.10 ;
 #declare rPm = 1.10 * VDW_factor ;
 #declare rPm_ = 1.10 ;
 #declare rSm = 1.10 * VDW_factor ;
 #declare rSm_ = 1.10 ;
 #declare rEu = 1.10 * VDW_factor ;
 #declare rEu_ = 1.10 ;
 #declare rGd = 1.10 * VDW_factor ;
 #declare rGd_ = 1.10 ;
 #declare rTb = 1.10 * VDW_factor ;
 #declare rTb_ = 1.10 ;
 #declare rDy = 1.10 * VDW_factor ;
 #declare rDy_ = 1.10 ;
 #declare rHo = 1.10 * VDW_factor ;
 #declare rHo_ = 1.10 ;
 #declare rEr = 1.10 * VDW_factor ;
 #declare rEr_ = 1.10 ;
 #declare rTm = 1.10 * VDW_factor ;
 #declare rTm_ = 1.10 ;
 #declare rYb = 1.10 * VDW_factor ;
 #declare rYb_ = 1.10 ;
 #declare rLu = 1.10 * VDW_factor ;
 #declare rLu_ = 1.10 ;
 #declare rHf = 1.10 * VDW_factor ;
 #declare rHf_ = 1.10 ;
 #declare rTa = 1.10 * VDW_factor ;
 #declare rTa_ = 1.10 ;
 #declare rW = 1.10 * VDW_factor ;
 #declare rW_ = 1.10 ;
 #declare rRe = 1.10 * VDW_factor ;
 #declare rRe_ = 1.10 ;
 #declare rOs = 1.10 * VDW_factor ;
 #declare rOs_ = 1.10 ;
 #declare rIr = 1.10 * VDW_factor ;
 #declare rIr_ = 1.10 ;
 #declare rPt = 1.10 * VDW_factor ;
 #declare rPt_ = 1.10 ;
 #declare rAu = 1.10 * VDW_factor ;
 #declare rAu_ = 1.10 ;
 #declare rHg = 1.10 * VDW_factor ;
 #declare rHg_ = 1.10 ;
 #declare rTl = 1.10 * VDW_factor ;
 #declare rTl_ = 1.10 ;
 #declare rPb = 1.10 * VDW_factor ;
 #declare rPb_ = 1.10 ;
 #declare rBi = 1.10 * VDW_factor ;
 #declare rBi_ = 1.10 ;
 #declare rPo = 1.10 * VDW_factor ;
 #declare rPo_ = 1.10 ;
 #declare rAt = 1.10 * VDW_factor ;
 #declare rAt_ = 1.10 ;
 #declare rRn = 1.10 * VDW_factor ;
 #declare rRn_ = 1.10 ;
 #declare rFr = 1.10 * VDW_factor ;
 #declare rFr_ = 1.10 ;
 #declare rRa = 1.10 * VDW_factor ;
 #declare rRa_ = 1.10 ;
 #declare rAc = 1.10 * VDW_factor ;
 #declare rAc_ = 1.10 ;
 #declare rTh = 1.10 * VDW_factor ;
 #declare rTh_ = 1.10 ;
 #declare rPa = 1.10 * VDW_factor ;
 #declare rPa_ = 1.10 ;
 #declare rU = 1.10 * VDW_factor ;
 #declare rU_ = 1.10 ;
 #declare rNp = 1.10 * VDW_factor ;
 #declare rNp_ = 1.10 ;
 #declare rPu = 1.10 * VDW_factor ;
 #declare rPu_ = 1.10 ;
 #declare rAm = 1.10 * VDW_factor ;
 #declare rAm_ = 1.10 ;
 #declare rCm = 1.10 * VDW_factor ;
 #declare rCm_ = 1.10 ;
 #declare rBk = 1.10 * VDW_factor ;
 #declare rBk_ = 1.10 ;
 #declare rCf = 1.10 * VDW_factor ;
 #declare rCf_ = 1.10 ;
 #declare rEs = 1.10 * VDW_factor ;
 #declare rEs_ = 1.10 ;
 #declare rFm = 1.10 * VDW_factor ;
 #declare rFm_ = 1.10 ;
 #declare rMd = 1.10 * VDW_factor ;
 #declare rMd_ = 1.10 ;
 #declare rNo = 1.10 * VDW_factor ;
 #declare rNo_ = 1.10 ;
 #declare rLr = 1.10 * VDW_factor ;
 #declare rLr_ = 1.10 ;
 #declare rCA = 1.70 * VDW_factor * CA_relativeSize ;
 #declare rCA_ = 1.70 ; 
// ---- Radius for "joining" atoms ----
// when atom radii below are all set to 1.0, you obtain a smooth "sticks" model

// ---- some TEXT parameters ----
 #declare r_UserDist = .04 ;      // radius of distances measurement lines
 #declare Label_scale = .4 ;      // Text height in angstroms
 #declare Label_XDecal = 0 ;      // Horizontal offset from CA
 #declare Label_YDecal = 0 ;      // Vertical offset from CA

 #declare Label_ZDecal = (-0.5) ; // offset from CA toward camera

 #declare Dist_scale = .4   ;     // Text height in angstroms
 #declare Dist_XDecal = (-.6) ;   // Horizontal offset from middle of H-bond
 #declare Dist_YDecal =  0   ;    // Vertical offset from middle of H-bond

 #declare Dist_ZDecal = (-.25);   // Depth offset from middle of H-bond

#declare Label_tex = texture { pigment { colour red 1.000 green 1.000 blue 0.000 } finish{ metallic }}
#declare LABEL_FINISH = finish {specular 1 roughness 0.001}
#declare Dist_tex = texture { pigment { colour red 1.000 green 1.000 blue 0.000 } finish{ metallic }}
//************ OBJECTS *********
#include "Helix.inc"



// ----- Open Gisila II -----
object{ A0_shape }   // LEU279 
object{ A1_shape }   // PHE280 
object{ A2_shape }   // THR281 
object{ A3_shape }   // MET282 
object{ A4_shape }   // VAL283 
object{ A5_shape }   // PHE284 
object{ A6_shape }   // VAL285 
object{ A7_shape }   // ILE286 
object{ A8_shape }   // SER287 
object{ A9_shape }   // SER288 
object{ A10_shape }   // ILE289 
object{ A11_shape }   // ILE290 
object{ A12_shape }   // Hbnds
//************ CAMERA *********

camera { location < 0, 0, -68.8 >  // get closer to <0,0,0> to zoom in on the model
// rotate < 0, 2.000, 0>    //  uncomment to get  left Eye stereo view
// rotate < 0, -2.000, 0>   //  uncomment to get right Eye stereo view
 direction < 0, 0, 2.836>
 up <0, 1, 0>
 right <640/480, 0, 0>  // **NOTE:** do not forget to adjust this value according to final Width/Height rendering
 look_at <0, 0, 0>
}
//************ LIGHTS *********

#declare Intensity = 2 ; 
background { color rgb < 1.000, 1.000, 1.000 >} 
object { light_source {< -20.000, 20.000, -20.000 > color rgb Intensity*1.000 }}
//END